The report was generated using the JSEQ_scRNAseq single-cell analysis pipeline. For more information, please visit: https://github.com/jkubis96/JSEQ_scRNAseq


1 Analysis Configuration Parameters

Parameter Value
mt_per 25
scale_factor 1e+06
n_features 1500
c_res 0.5
heterogeneity var
mt_cssg FALSE
m_val 0.05
top_m 50
max_genes 1000
max_combine 1000
loss_val 0.05
s_factor 0.7
p_bin 0.1
drop TRUE
min_c 10

The parameters above were used during the current analysis.
If you need to apply different analysis conditions, modify the parameters in the configuration file.

Parameters description:

  • mt_per
    Maximum percentage of mitochondrial genes per cell.
    Default: 25%
  • down
    Lower threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • up
    Upper threshold for the number of genes per cell.
    Default: NA (automatically computed if NA)
  • scale_factor
    Scale factor used for data normalization.
  • n_features
    Number of variable features to detect for clustering.
  • c_res
    Clustering resolution — higher values produce more clusters.
  • heterogeneity
    Method for estimating cluster heterogeneity.
    Options: var (within-cluster variance), deg (deregulated gene profiles).
    Default: deg
  • mt_cssg
    Whether to include mitochondrial genes when creating subclasses and subtypes.
    Options: TRUE, FALSE.
    Default: FALSE
  • m_val
    Maximum p-value threshold for marker detection in advanced subtype analyses.
    Default: 0.05
  • top_m
    Maximum number of top markers used for naming clusters based on effect size metrics.
    Default: 50
  • max_genes
    Maximum number of input genes considered in cluster heterogeneity discovery.
    Default: 1000
  • max_combine
    Maximum number of initial combinations for each iteration during heterogeneity discovery.
    Default: 1000
  • loss_val
    Assigned value for potentially unclassified cells within a cluster.
  • s_factor
    Maximum split factor for gene occurrence in heterogeneity discovery (0.2–1).
    Default: 0.8
  • p_bin
    Minimum cell proportion required for population presence based on binomial test p-value.
    Default: 0.05
  • min_c
    Minimum cell proportion required for population presence as defined by the user (independent of binomial test).
    Default: 10
  • drop
    Boolean indicating whether to drop non-significant subtypes based on p_bin and min_c.
    Default: TRUE

The configuration file is available in the directory:
JSEQ_scRNAseq/requirements_file/config_file.conf

Additional configuration files for other analysis steps can also be found in:
JSEQ_scRNAseq/requirements_file

For more information, please visit:
https://github.com/jkubis96/JSEQ_scRNAseq



2 Cell content analysis

2.1 Read distribution across genomic features

2.2 Count (UMI) per barcode (cell)

2.3 Cell barcode knee plot

The above graph illustrates general trends and quality metrics at the initial stage of single-cell analysis; however, it does not represent the final number of detected cells.

2.4 Ratio of number of genes to counts

2.5 Number of genes and counts per cell

2.6 Percentage of ribosomal and mitochondrial genes [%]



3 Quality control of cell content

3.1 Genes per cell content & thresholds

3.2 Genes upper & lower thresholds per cell

3.3 Number of cells across different stages of analysis



4 Gene expression analysis across cells

4.1 Top highly variable genes in the dataset



5 Princilpe component selection

5.1 ElbowPlot - principal components cutoff

5.2 JackStrawPlot - PC significance



6 Cells clustering

6.1 UMAP clusters



7 Subclasses identification based on marker genes

7.1 PCA cisualization of subclasses

7.2 UMAP visualization of subclasses

7.3 Subclasses - cell composition


7.4 Subclasses markers - top 25


Top 25 merkers
genes pct_occurrence esm avg_logFC p_val cluster p_adj_bf p_adj_bh subclass
4930556G01Rik 0.9166667 11.1995653 7.466747 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Gm29865 0.8333333 8.5502517 7.063715 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Sh3gl2 0.8750000 7.0419628 6.078305 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Gm40375 0.5833333 6.7743629 10.240136 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Rassf6 0.6250000 6.4099946 7.740948 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Fam71e2 0.5416667 6.2140865 10.096008 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Gm18985 0.5000000 5.7242288 10.021117 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Scn1a 0.7500000 5.6916407 5.891056 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Sugct.var1 0.8750000 5.6772781 5.305470 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Haao 0.7083333 5.4716661 5.953027 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Slc17a9 0.9166667 5.3482554 4.972927 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Capn13 0.4583333 5.2622244 9.879547 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Ido2 0.5416667 4.8463828 6.628096 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Gm33594 0.4166667 4.8406152 9.759781 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Hydin 0.5833333 4.6135954 5.989830 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Lipn 0.4166667 4.5794359 8.074069 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Zranb3 0.4166667 4.5020524 7.918201 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Col6a4 0.3750000 4.4394258 9.554738 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Dgki.var1 0.7083333 4.3272753 5.052350 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Has2os 0.8333333 4.3228761 4.599427 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Xylt1 0.3750000 4.1710722 7.884742 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Rgs7 0.5416667 4.1628067 5.821348 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Wnt2 0.3333333 4.0583154 9.399657 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Gm49944 0.3333333 3.7438029 7.596004 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Gabra6 0.2916667 3.6762937 9.207132 0.0e+00 1 0.0000000 0.0000000 CTX Foxg1 4930556g01rik
Gm48488 1.0000000 22.1359206 8.821234 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
4930598F16Rik 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
8430419K02Rik 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
9130230L23Rik 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
9630028B13Rik 0.5000000 19.8997487 9.828591 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Ace2 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Adsl 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Agr3 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Akr1c18 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Cfap97d2 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Cluh 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Cybb 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Cygb 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Dgat1 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Dusp22 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
F9 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Fam8a1 0.5000000 19.8997487 9.904780 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Fgf10 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm10160 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm16185 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm21284 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm21680 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm26631 0.5000000 19.8997487 9.826973 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm28919 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm39469 0.5000000 19.8997487 9.828591 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm42567 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm43071 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm45733 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm49355 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm49470 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm5396 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Gm7115 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Klra9 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Large1.var2 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Lyrm7 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Mir7090 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Mul1 0.5000000 19.8997487 9.957553 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Nup188 0.5000000 19.8997487 9.904780 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Pdk3 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Platr21.var1 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Plod1 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Pm20d2 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Qpctl 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Rdh5 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Sat2 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Stx1b 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Sult2a6 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Tex12 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Tnip3 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Tti1 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Zdhhc22 0.5000000 19.8997487 9.685246 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
Zscan18 0.5000000 19.8997487 9.683460 0.0e+00 3 0.0000000 0.0000000 CTX Foxg1 Gm48488
mt-Rnr2 0.9880000 0.5382017 0.106147 5.6e-06 0 0.0010087 0.0010087 CTX Foxg1 Mt-rnr2
Olfr1109 0.5555556 4.5271015 5.863794 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gm28140 0.2222222 3.5314112 8.678859 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Rnf19a 0.5555556 3.3078869 4.744706 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Grip2 0.2222222 2.6547112 6.083423 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Rtkn 0.2222222 2.6313102 6.060980 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Cfap65 0.2222222 2.5628178 5.984428 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gm32067 0.3888889 2.4728674 4.411059 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Stox1 0.2777778 2.4701692 5.205027 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Smpd1 0.1666667 2.4280707 6.424995 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Mylip 0.1666667 2.4115612 6.425745 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Marchf1 0.5000000 2.3452963 3.769185 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Tmprss11d 0.1111111 2.3446486 7.553051 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
S100a16 0.1111111 2.3432614 7.691473 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Tnfsf8 0.1111111 2.3409718 7.576308 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Oser1 0.1111111 2.3392460 7.623265 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Ccdc80 0.1111111 2.3349403 7.623862 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gcn1 0.2777778 2.1706125 4.730389 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gm20521 0.2777778 2.1473324 4.713211 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gab3 0.2222222 2.0932964 4.966135 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gabrd 0.2222222 2.0917238 4.766336 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gm4924 0.1666667 2.0600819 5.399193 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Gfra2 0.1666667 2.0439873 5.588253 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Prune2 0.2777778 1.9650185 4.321355 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
Nell1 0.2777778 1.9339326 4.441616 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109
1700030N03Rik 0.1111111 1.9151496 6.017624 0.0e+00 2 0.0000000 0.0000000 STR Foxp1 Olfr1109


7.5 Heatmap of cell subclasses - log(CPM + 1)

7.6 Heatmap of cell subclasses - scale(log(CPM + 1))




8 Subtypes identification based on CSSG genes

8.1 UMAP visualization


8.2 Subtypes - cell composition


8.3 Subtypes markers - top 25


Top 25 markers
genes pct_occurrence esm avg_logFC p_val subtype p_adj_bf p_adj_bh cluster
Ybx1 1.0000000 1.9171018 2.0287499 0.0000000 CTX Emx2 Mt-rnr2 - Ybx1 0.0000000 0.0000000 0
Dcakd 0.1081081 1.1864863 4.9428672 0.0000000 CTX Emx2 Mt-rnr2 - Ybx1 0.0000000 0.0000000 0
Rbx1 0.1891892 0.7986785 2.4957774 0.0000036 CTX Emx2 Mt-rnr2 - Ybx1 0.0008360 0.0002787 0
Atp8a2.var1 0.1081081 0.7743690 3.1804955 0.0000070 CTX Emx2 Mt-rnr2 - Ybx1 0.0016163 0.0004041 0
Thap2 0.1081081 0.7363940 3.0288530 0.0000214 CTX Emx2 Mt-rnr2 - Ybx1 0.0049685 0.0009937 0
Trp53inp2 0.1081081 0.7277592 2.9468211 0.0000458 CTX Emx2 Mt-rnr2 - Ybx1 0.0106339 0.0017723 0
Snrpc 0.1351351 0.6453325 2.4194953 0.0001339 CTX Emx2 Mt-rnr2 - Ybx1 0.0310619 0.0044374 0
Sox2 0.2702703 0.6153337 1.5888521 0.0003349 CTX Emx2 Mt-rnr2 - Ybx1 0.0776920 0.0086324 0
Ywhah 0.1081081 0.6081505 2.5646325 0.0002924 CTX Emx2 Mt-rnr2 - Ybx1 0.0678455 0.0084807 0
Fam172a 0.1351351 0.5867799 2.1796424 0.0007848 CTX Emx2 Mt-rnr2 - Ybx1 0.1820815 0.0165529 0
Prkg1.var1 0.1621622 0.5656085 1.9594370 0.0007215 CTX Emx2 Mt-rnr2 - Ybx1 0.1673879 0.0165529 0
Gm14681 0.1081081 0.5651465 2.3386136 0.0011994 CTX Emx2 Mt-rnr2 - Ybx1 0.2782605 0.0213495 0
Dlg2 0.1621622 0.5646849 1.9033693 0.0012883 CTX Emx2 Mt-rnr2 - Ybx1 0.2988931 0.0213495 0
Chchd2 0.2162162 0.5622446 1.6581844 0.0009314 CTX Emx2 Mt-rnr2 - Ybx1 0.2160735 0.0180061 0
Ccnd2 0.2702703 0.5137574 1.3347914 0.0024949 CTX Emx2 Mt-rnr2 - Ybx1 0.5788078 0.0385872 0
Atp2b1 0.1081081 0.4977747 2.1041547 0.0032404 CTX Emx2 Mt-rnr2 - Ybx1 0.7517736 0.0469858 0
Nnat 0.4054054 0.4955738 0.9935554 0.0035143 CTX Emx2 Mt-rnr2 - Ybx1 0.8153138 0.0479596 0
Fmnl2 0.2972973 0.4952988 1.2165277 0.0037905 CTX Emx2 Mt-rnr2 - Ybx1 0.8794029 0.0488557 0
Erc1 0.1081081 0.4948819 2.0160429 0.0074685 CTX Emx2 Mt-rnr2 - Ybx1 1.0000000 0.0721953 0
Nop53 0.1081081 0.4729095 1.9833468 0.0064197 CTX Emx2 Mt-rnr2 - Ybx1 1.0000000 0.0721953 0
Psmb1 0.1351351 0.4684800 1.7548802 0.0065249 CTX Emx2 Mt-rnr2 - Ybx1 1.0000000 0.0721953 0
Gm9385 0.1081081 0.4619777 1.9270491 0.0079442 CTX Emx2 Mt-rnr2 - Ybx1 1.0000000 0.0737223 0
Robo2.var1 0.2162162 0.4555538 1.3639031 0.0068458 CTX Emx2 Mt-rnr2 - Ybx1 1.0000000 0.0721953 0
Ddx39b 0.1621622 0.4489223 1.5599645 0.0073674 CTX Emx2 Mt-rnr2 - Ybx1 1.0000000 0.0721953 0
Idh1 0.1351351 0.4484540 1.6889962 0.0087022 CTX Emx2 Mt-rnr2 - Ybx1 1.0000000 0.0765317 0
Actb 1.0000000 1.6932357 1.7665177 0.0000000 CTX Foxg1 Mt-rnr2 - Actb 0.0000000 0.0000000 0
Gm35769 0.5652174 1.3632894 2.2785288 0.0000000 CTX Foxg1 Mt-rnr2 - Actb 0.0000000 0.0000000 0
Ssr3 0.1304348 0.8606503 3.3710241 0.0000000 CTX Foxg1 Mt-rnr2 - Actb 0.0000036 0.0000012 0
Ndufa12 0.1304348 0.7788255 2.9972950 0.0000007 CTX Foxg1 Mt-rnr2 - Actb 0.0001478 0.0000370 0
Cbx3 0.2173913 0.5751465 1.7082969 0.0002185 CTX Foxg1 Mt-rnr2 - Actb 0.0465486 0.0089805 0
Sf3b2 0.1739130 0.5722861 1.8711424 0.0003111 CTX Foxg1 Mt-rnr2 - Actb 0.0662538 0.0094648 0
Eif4a1 0.3043478 0.5651863 1.3776222 0.0002530 CTX Foxg1 Mt-rnr2 - Actb 0.0538831 0.0089805 0
Dclk2 0.1086957 0.5465587 2.2774827 0.0007047 CTX Foxg1 Mt-rnr2 - Actb 0.1500990 0.0183467 0
Grb10 0.1086957 0.5298789 2.2341166 0.0007752 CTX Foxg1 Mt-rnr2 - Actb 0.1651206 0.0183467 0
Canx 0.1956522 0.5100637 1.6104020 0.0008732 CTX Foxg1 Mt-rnr2 - Actb 0.1859847 0.0185985 0
Pcbp2 0.1304348 0.5065376 1.9578194 0.0011505 CTX Foxg1 Mt-rnr2 - Actb 0.2450589 0.0222781 0
Mdk 0.1304348 0.4848666 1.8823794 0.0016681 CTX Foxg1 Mt-rnr2 - Actb 0.3553000 0.0273308 0
Gm8797 0.1086957 0.4806279 2.0694415 0.0015288 CTX Foxg1 Mt-rnr2 - Actb 0.3256341 0.0271362 0
Naca 0.2826087 0.4786172 1.2089111 0.0019801 CTX Foxg1 Mt-rnr2 - Actb 0.4217564 0.0283162 0
Ptprm.var1 0.1304348 0.4699678 1.8442428 0.0019941 CTX Foxg1 Mt-rnr2 - Actb 0.4247435 0.0283162 0
Scnn1g 0.2391304 0.4546657 1.2602017 0.0039916 CTX Foxg1 Mt-rnr2 - Actb 0.8502126 0.0483626 0
Top2a 0.2173913 0.4503621 1.3364014 0.0035644 CTX Foxg1 Mt-rnr2 - Actb 0.7592170 0.0474511 0
Srsf2 0.1086957 0.4429607 1.8617354 0.0050678 CTX Foxg1 Mt-rnr2 - Actb 1.0000000 0.0539720 0
Tcaf1 0.1521739 0.4420410 1.5789082 0.0043140 CTX Foxg1 Mt-rnr2 - Actb 0.9188892 0.0483626 0
Ank3.var1 0.1304348 0.4310665 1.7067790 0.0041771 CTX Foxg1 Mt-rnr2 - Actb 0.8897160 0.0483626 0
Ina 0.1739130 0.4211857 1.3837495 0.0068715 CTX Foxg1 Mt-rnr2 - Actb 1.0000000 0.0665288 0
Rpl14-ps1 0.1304348 0.4022667 1.5336564 0.0110858 CTX Foxg1 Mt-rnr2 - Actb 1.0000000 0.0901484 0
Top2b 0.2173913 0.4012425 1.1524700 0.0099646 CTX Foxg1 Mt-rnr2 - Actb 1.0000000 0.0884361 0
Ssb 0.2173913 0.3985863 1.1587566 0.0094490 CTX Foxg1 Mt-rnr2 - Actb 1.0000000 0.0875064 0
Auts2.var1 0.1739130 0.3933858 1.3038219 0.0110652 CTX Foxg1 Mt-rnr2 - Actb 1.0000000 0.0901484 0
Prkca.var1 1.0000000 1.3434987 1.3081083 0.0000000 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.0000000 0.0000000 0
Prmt1 0.1449275 0.6398882 2.4647752 0.0000007 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.0001211 0.0000605 0
Rasa1 0.1449275 0.6300771 2.3807171 0.0000018 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.0003179 0.0001060 0
Sptbn1 0.1304348 0.5261300 2.1107784 0.0000506 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.0089615 0.0022404 0
Tanc2.var1 0.1304348 0.4578865 1.8153667 0.0004713 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.0834251 0.0142240 0
Eif3e 0.1014493 0.4445065 2.0411578 0.0004822 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.0853440 0.0142240 0
Tmcc1 0.2173913 0.4376614 1.3094989 0.0006968 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.1233251 0.0173068 0
Cask.var1 0.1014493 0.4305433 1.9695502 0.0007822 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.1384541 0.0173068 0
Snrnp70 0.1449275 0.4228504 1.5735975 0.0012105 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.2142551 0.0238061 0
Cox4i1 0.1739130 0.4018364 1.3688086 0.0016544 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.2928295 0.0292829 0
Zmiz1 0.1014493 0.3996749 1.8176023 0.0019434 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.3439839 0.0312713 0
Pabpn1 0.1014493 0.3868637 1.7299373 0.0035754 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.6328488 0.0479378 0
Fis1 0.1014493 0.3679400 1.6909418 0.0033615 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.5949867 0.0479378 0
Smarca4 0.1304348 0.3567746 1.4447922 0.0037917 CTX Foxg1 Mt-rnr2 - Prkca.var1 0.6711288 0.0479378 0
Grm7 0.1159420 0.3453727 1.4714955 0.0059275 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0699448 0
Rab6a 0.1014493 0.3403169 1.5399908 0.0082013 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0809688 0
Zfp280d 0.1014493 0.3383991 1.5535897 0.0068353 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0756159 0
Sod1 0.1449275 0.3370799 1.2473125 0.0086961 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0810108 0
Dync1i2 0.1594203 0.3361855 1.1910312 0.0082341 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0809688 0
Gm21865 0.1159420 0.3278148 1.3711305 0.0116605 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0938140 0
Qk 0.1594203 0.3265337 1.1566797 0.0098729 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0873749 0
Hnrnpc 0.2608696 0.3219124 0.8377533 0.0116289 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0938140 0
Rps13 0.1449275 0.3167456 1.1813087 0.0128350 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0946579 0
Rpl36 0.1014493 0.3106833 1.4236214 0.0127214 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.0946579 0
Ankrd11 0.1159420 0.3073395 1.2597929 0.0242978 CTX Foxg1 Mt-rnr2 - Prkca.var1 1.0000000 0.1343975 0
Rn18s-rs5 1.0000000 1.7796464 1.7618634 0.0000000 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 0.0000000 0.0000000 0
Mir6236 0.1612903 0.9388042 3.9721237 0.0000000 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 0.0000000 0.0000000 0
Jarid2 0.1612903 0.5304899 1.9684902 0.0000030 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 0.0004804 0.0001601 0
Map2 0.2903226 0.3931904 0.9918083 0.0004871 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 0.0784212 0.0196053 0
C130071C03Rik 0.1290323 0.3644019 1.4755587 0.0013567 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 0.2184323 0.0436865 0
Pabpc4 0.1397849 0.3064181 1.1836223 0.0059200 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 0.9531203 0.1191400 0
Rps27a 0.1505376 0.2963836 1.1264507 0.0055768 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 0.8978667 0.1191400 0
Calm3 0.1397849 0.2963638 1.1430501 0.0083186 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Eif5b 0.1182796 0.2852560 1.2113887 0.0105460 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Calm2 0.2365591 0.2840270 0.8004551 0.0113310 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Nap1l4 0.1075269 0.2805208 1.2574949 0.0112080 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Igf2bp3 0.2580645 0.2762463 0.7418267 0.0134368 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Nap1l1 0.2150538 0.2761982 0.8313290 0.0132757 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Dcx 0.1397849 0.2727648 1.0382121 0.0153682 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1335103 0
Rpl14 0.2365591 0.2717023 0.7638071 0.0136241 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Gm48228 0.3118280 0.2714978 0.6339965 0.0157803 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1335103 0
Tulp4 0.1075269 0.2683639 1.2290897 0.0096195 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Ranbp1 0.1075269 0.2639792 1.1735897 0.0165851 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1335103 0
Rbmx 0.1075269 0.2629451 1.1705042 0.0184577 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1397167 0
Tardbp 0.1182796 0.2617328 1.0999697 0.0190917 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1397167 0
Il1rapl1 0.1075269 0.2573849 1.1897009 0.0105703 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1290282 0
Fgfr2 0.1612903 0.2559629 0.9113562 0.0208568 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1459977 0
Hsp90ab1 0.3978495 0.2531302 0.4977431 0.0234364 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1572191 0
Psmc2 0.3118280 0.2438620 0.5699428 0.0305066 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1844715 0
Pafah1b1 0.1290323 0.2405136 0.9685767 0.0309362 CTX Foxg1 Mt-rnr2 - Rn18s-rs5 1.0000000 0.1844715 0
Sox11 1.0000000 1.8846896 1.9446252 0.0000000 CTX Foxg1 Mt-rnr2 - Sox11 0.0000000 0.0000000 0
Atrx 0.2560976 0.5958280 1.6894062 0.0000005 CTX Foxg1 Mt-rnr2 - Sox11 0.0000837 0.0000419 0
Foxg1 0.1219512 0.4234915 1.8417174 0.0001542 CTX Foxg1 Mt-rnr2 - Sox11 0.0286770 0.0095590 0
Rps27 0.1219512 0.4137357 1.7476697 0.0004063 CTX Foxg1 Mt-rnr2 - Sox11 0.0755650 0.0188912 0
Kif21a 0.1341463 0.3967805 1.5756000 0.0008008 CTX Foxg1 Mt-rnr2 - Sox11 0.1489563 0.0285938 0
mt-Nd6 0.3658537 0.3867704 0.8275315 0.0009421 CTX Foxg1 Mt-rnr2 - Sox11 0.1752293 0.0285938 0
Ptges3 0.1707317 0.3811038 1.3299657 0.0011134 CTX Foxg1 Mt-rnr2 - Sox11 0.2070889 0.0285938 0
Rpl26 0.1707317 0.3739141 1.3007454 0.0012298 CTX Foxg1 Mt-rnr2 - Sox11 0.2287507 0.0285938 0
Khdrbs1 0.1463415 0.3596210 1.3769787 0.0016589 CTX Foxg1 Mt-rnr2 - Sox11 0.3085619 0.0308562 0
mt-Nd5 0.5609756 0.3555750 0.5357037 0.0026381 CTX Foxg1 Mt-rnr2 - Sox11 0.4906855 0.0408905 0
Anp32e 0.1463415 0.3525185 1.3687149 0.0015817 CTX Foxg1 Mt-rnr2 - Sox11 0.2942035 0.0308562 0
Nsg1 0.1097561 0.3410746 1.5364795 0.0024783 CTX Foxg1 Mt-rnr2 - Sox11 0.4609551 0.0408905 0
Eif5 0.1341463 0.3273026 1.2808129 0.0058101 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0656014 0
Prdx2 0.1707317 0.3186562 1.1045945 0.0057447 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0656014 0
Safb 0.1097561 0.3170178 1.4394573 0.0037800 CTX Foxg1 Mt-rnr2 - Sox11 0.7030805 0.0540831 0
Ppp1r12a 0.1097561 0.3157182 1.4023737 0.0059648 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0656014 0
Cox7c 0.1707317 0.3147621 1.0647863 0.0084223 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0761872 0
Selenow 0.1097561 0.3124662 1.3608747 0.0089209 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0761872 0
Hspa4 0.1341463 0.3019907 1.2056156 0.0078731 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0761872 0
Wdr26 0.1097561 0.2992287 1.3317442 0.0084092 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0761872 0
Slc25a5 0.1341463 0.2979490 1.1920069 0.0090114 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0761872 0
Smc3 0.1463415 0.2934512 1.1504325 0.0059958 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.0656014 0
Ubb 0.1585366 0.2914608 1.0358156 0.0145108 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.1079600 0
Ubb-ps 0.1341463 0.2889723 1.1346213 0.0142761 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.1079600 0
Rps8 0.3902439 0.2803512 0.5579234 0.0127298 CTX Foxg1 Mt-rnr2 - Sox11 1.0000000 0.1029453 0
Tuba1a 1.0000000 1.5592300 1.5856357 0.0000000 CTX Foxg1 Mt-rnr2 - Tuba1a 0.0000000 0.0000000 0
Bex3 0.1694915 0.5295242 1.8216350 0.0001234 CTX Foxg1 Mt-rnr2 - Tuba1a 0.0186260 0.0093130 0
Pomp 0.1016949 0.5189493 2.3129321 0.0002307 CTX Foxg1 Mt-rnr2 - Tuba1a 0.0348405 0.0116135 0
Calm1 0.2372881 0.3934544 1.0950144 0.0036250 CTX Foxg1 Mt-rnr2 - Tuba1a 0.5473713 0.1109052 0
Dlgap1 0.2542373 0.3848133 1.0274445 0.0040301 CTX Foxg1 Mt-rnr2 - Tuba1a 0.6085451 0.1109052 0
Psma4 0.1016949 0.3838568 1.7339650 0.0044068 CTX Foxg1 Mt-rnr2 - Tuba1a 0.6654311 0.1109052 0
Sumo1 0.1016949 0.3549650 1.5829836 0.0107083 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2307504 0
Rpl10a 0.1016949 0.3413019 1.5192872 0.0138111 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2307504 0
Cox7b 0.1016949 0.3377608 1.4893684 0.0152815 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2307504 0
Yme1l1 0.1016949 0.3349309 1.4996649 0.0141397 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2307504 0
Zfp638 0.1186441 0.3309009 1.3380518 0.0213416 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2558288 0
Rpl5-ps1 0.1186441 0.3239287 1.3272172 0.0188428 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2558288 0
Smdt1 0.1016949 0.3174341 1.4102943 0.0220250 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2558288 0
Ubxn4 0.1016949 0.3141623 1.3843883 0.0266775 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2685536 0
Cct5 0.1016949 0.3128776 1.3947507 0.0238832 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2575968 0
Rps23 0.1864407 0.2919223 0.9411326 0.0313575 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2874496 0
Ccdc34 0.1186441 0.2897498 1.1881435 0.0349606 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2903268 0
Senp6 0.1016949 0.2821751 1.2509910 0.0413612 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2903268 0
Cntnap2.var1 0.1186441 0.2801193 1.1393818 0.0437711 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2903268 0
Grm8.var1 0.3898305 0.2779849 0.5456092 0.0323619 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2874496 0
6530403H02Rik 0.1016949 0.2769793 1.2325985 0.0431293 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2903268 0
Sox4 0.2881356 0.2690202 0.6514306 0.0443809 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2903268 0
Neurod6 0.1016949 0.2660284 1.1972272 0.0496257 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2903268 0
mt-Co1 0.4576271 0.2616962 0.4509143 0.0366689 CTX Foxg1 Mt-rnr2 - Tuba1a 1.0000000 0.2903268 0
Tubb2b 1.0000000 1.7999940 1.8850364 0.0000000 CTX Foxg1 Mt-rnr2 - Tubb2b 0.0000000 0.0000000 0
Atp5j 0.1372549 0.5763523 2.1745033 0.0001179 CTX Foxg1 Mt-rnr2 - Tubb2b 0.0117925 0.0058963 0
Cpe 0.1568627 0.5316909 1.8814739 0.0003326 CTX Foxg1 Mt-rnr2 - Tubb2b 0.0332574 0.0110858 0
Kcnh7.var1 0.1372549 0.5283322 1.9763373 0.0006650 CTX Foxg1 Mt-rnr2 - Tubb2b 0.0665014 0.0133003 0
Eif4g3 0.1568627 0.5212688 1.8402546 0.0004506 CTX Foxg1 Mt-rnr2 - Tubb2b 0.0450649 0.0112662 0
Calr 0.1372549 0.3634518 1.3641494 0.0140125 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2001779 0
Ilf2 0.1372549 0.3606909 1.3688592 0.0137012 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2001779 0
Anp32b 0.2352941 0.3499972 0.9572681 0.0161757 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2007002 0
Csde1 0.1960784 0.3407600 1.0536971 0.0215895 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2007002 0
Ezh2 0.1960784 0.3361847 1.0307037 0.0201023 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2007002 0
Rpl32 0.2156863 0.3327181 0.9699961 0.0240840 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2007002 0
Ik 0.1176471 0.3239312 1.3143982 0.0306659 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2358917 0
Cadm1 0.1176471 0.3203755 1.3459602 0.0230557 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2007002 0
Tcaf1 0.1176471 0.3010902 1.2124008 0.0489364 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.3262425 0
St13 0.1176471 0.2989381 1.2282249 0.0403698 CTX Foxg1 Mt-rnr2 - Tubb2b 1.0000000 0.2883554 0
Tubb5 1.0000000 1.6973235 1.8064875 0.0000000 CTX Foxg1 Mt-rnr2 - Tubb5 0.0000000 0.0000000 0
Scoc 0.1212121 1.0071403 3.8822982 0.0000000 CTX Foxg1 Mt-rnr2 - Tubb5 0.0000016 0.0000008 0
Ccdc90b 0.1212121 0.9407845 3.5498767 0.0000003 CTX Foxg1 Mt-rnr2 - Tubb5 0.0000569 0.0000190 0
Stmn3 0.2121212 0.7122322 2.1177164 0.0000628 CTX Foxg1 Mt-rnr2 - Tubb5 0.0116869 0.0029217 0
Gm11942 0.1515152 0.7046772 2.3979274 0.0001687 CTX Foxg1 Mt-rnr2 - Tubb5 0.0313814 0.0052302 0
Ckb 0.2727273 0.6977366 1.7634985 0.0001054 CTX Foxg1 Mt-rnr2 - Tubb5 0.0196128 0.0039226 0
Ccdc148.var1 0.1212121 0.6538128 2.5166207 0.0004322 CTX Foxg1 Mt-rnr2 - Tubb5 0.0803929 0.0114847 0
Astn1 0.1212121 0.5698647 2.2053383 0.0023772 CTX Foxg1 Mt-rnr2 - Tubb5 0.4421572 0.0552697 0
Rtn1 0.2727273 0.5243553 1.3458507 0.0033004 CTX Foxg1 Mt-rnr2 - Tubb5 0.6138708 0.0682079 0
Parp1 0.1212121 0.5193640 2.0054641 0.0062200 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.0889942 0
Rplp1 0.1818182 0.5094686 1.6324652 0.0047231 CTX Foxg1 Mt-rnr2 - Tubb5 0.8784888 0.0855486 0
Rab18 0.1212121 0.5080271 2.0018758 0.0052347 CTX Foxg1 Mt-rnr2 - Tubb5 0.9736590 0.0855486 0
Tmem178b 0.1818182 0.5006720 1.6026371 0.0055193 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.0855486 0
Gm12346 0.1212121 0.4817246 1.9133919 0.0068993 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.0916615 0
Cd24a 0.2424242 0.4632544 1.2648054 0.0092651 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1148869 0
Rps7-ps3 0.1818182 0.4467705 1.4334757 0.0123661 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1390286 0
Onecut2 0.2727273 0.4458995 1.1530285 0.0133775 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1390286 0
Tspan3 0.1212121 0.4446401 1.7576279 0.0142018 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1390286 0
Igf1r 0.1515152 0.4420995 1.5601129 0.0135070 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1390286 0
Rpl10 0.1515152 0.4414114 1.5575781 0.0154198 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1434040 0
Pebp1 0.1515152 0.4285155 1.5278821 0.0169213 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1498745 0
Thra 0.1212121 0.4227378 1.6839868 0.0184137 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1526117 0
Hnrnpdl 0.1818182 0.4166812 1.3486562 0.0188713 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1526117 0
Dynlrb1 0.1515152 0.4137085 1.4796506 0.0199736 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1547953 0
Hdgfl3 0.1212121 0.4115344 1.6370559 0.0213181 CTX Foxg1 Mt-rnr2 - Tubb5 1.0000000 0.1586066 0
Gm10801 1.0000000 2.4520462 2.4643283 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm10800 0.9636364 1.8644442 1.9458894 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm10717 0.6454545 1.8083568 2.9483498 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm10722 0.7545455 1.7428221 2.4395690 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm33838 0.6636364 1.7399873 2.7579665 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm10718 0.7000000 1.6329238 2.4370304 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm10719 0.4454545 1.2883683 2.7940544 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm11168 0.3636364 1.1264145 2.7860560 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm10721 0.3181818 1.0116793 2.6982151 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Gm17535 0.2181818 0.9648028 3.4410538 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Chl1 0.2818182 0.8008415 2.2055157 0.0000000 STR Foxp1 Mt-rnr2 - Gm10801 0.0000000 0.0000000 0
Pde4d.var1 0.1818182 0.5602657 1.9782604 0.0000002 STR Foxp1 Mt-rnr2 - Gm10801 0.0000099 0.0000008 0
Setbp1 0.2181818 0.5246896 1.6526284 0.0000005 STR Foxp1 Mt-rnr2 - Gm10801 0.0000335 0.0000026 0
Birc6 0.1272727 0.4804087 2.0891344 0.0000044 STR Foxp1 Mt-rnr2 - Gm10801 0.0002726 0.0000195 0
Ash1l 0.1090909 0.4521285 2.1694375 0.0000086 STR Foxp1 Mt-rnr2 - Gm10801 0.0005304 0.0000354 0
Akap6 0.1363636 0.4408104 1.8110947 0.0000279 STR Foxp1 Mt-rnr2 - Gm10801 0.0017268 0.0001079 0
Nbea.var1 0.1181818 0.3510386 1.5005159 0.0011690 STR Foxp1 Mt-rnr2 - Gm10801 0.0724782 0.0040639 0
Gria2 0.1545455 0.3301757 1.2415708 0.0011799 STR Foxp1 Mt-rnr2 - Gm10801 0.0731511 0.0040639 0
Rab10 0.1181818 0.3154543 1.3525281 0.0025930 STR Foxp1 Mt-rnr2 - Gm10801 0.1607667 0.0084614 0
Dclk1 0.1363636 0.2713191 1.0514734 0.0111971 STR Foxp1 Mt-rnr2 - Gm10801 0.6942188 0.0347109 0
Cdh2.var1 0.1272727 0.2545904 1.0220769 0.0178860 STR Foxp1 Mt-rnr2 - Gm10801 1.0000000 0.0504059 0
Trpc4 0.1818182 0.2493583 0.8245759 0.0146456 STR Foxp1 Mt-rnr2 - Gm10801 0.9080248 0.0432393 0
Macf1 0.1363636 0.2119912 0.8179896 0.0416379 STR Foxp1 Mt-rnr2 - Gm10801 1.0000000 0.1122413 0
Gm50306 1.0000000 1.6164049 1.7326981 0.0000000 STR Foxp1 Mt-rnr2 - Gm50306 0.0000000 0.0000000 0
Pcbp2 0.1818182 0.7867481 2.4714534 0.0000188 STR Foxp1 Mt-rnr2 - Gm50306 0.0032899 0.0016449 0
Rpl28 0.2424242 0.6610546 1.7928884 0.0002753 STR Foxp1 Mt-rnr2 - Gm50306 0.0481787 0.0105722 0
Rcc2 0.1212121 0.6387760 2.5200055 0.0002912 STR Foxp1 Mt-rnr2 - Gm50306 0.0509651 0.0105722 0
Gdi1 0.1515152 0.6343191 2.2079200 0.0004970 STR Foxp1 Mt-rnr2 - Gm50306 0.0869682 0.0130632 0
Sumo3 0.1212121 0.6320485 2.5055489 0.0003021 STR Foxp1 Mt-rnr2 - Gm50306 0.0528610 0.0105722 0
Tpm3-rs7 0.1212121 0.6156501 2.3952708 0.0006815 STR Foxp1 Mt-rnr2 - Gm50306 0.1192609 0.0131558 0
Eif4b 0.1212121 0.6155362 2.3961160 0.0007042 STR Foxp1 Mt-rnr2 - Gm50306 0.1232358 0.0131558 0
Fgf12.var1 0.1212121 0.6141136 2.3946273 0.0007518 STR Foxp1 Mt-rnr2 - Gm50306 0.1315580 0.0131558 0
Clic4 0.1212121 0.6048300 2.4060725 0.0005225 STR Foxp1 Mt-rnr2 - Gm50306 0.0914425 0.0130632 0
Tshz2 0.1818182 0.6022903 1.9315290 0.0009804 STR Foxp1 Mt-rnr2 - Gm50306 0.1715626 0.0155966 0
Pds5a 0.1212121 0.5618153 2.1562147 0.0032140 STR Foxp1 Mt-rnr2 - Gm50306 0.5624497 0.0401750 0
Klhdc10 0.1212121 0.5495636 2.1824322 0.0017886 STR Foxp1 Mt-rnr2 - Gm50306 0.3129982 0.0260832 0
Ythdf2 0.1212121 0.5350725 2.1189060 0.0026929 STR Foxp1 Mt-rnr2 - Gm50306 0.4712572 0.0362506 0
Vcp 0.1515152 0.5300157 1.8479240 0.0041293 STR Foxp1 Mt-rnr2 - Gm50306 0.7226267 0.0417876 0
Farp1 0.1212121 0.5286502 2.0519906 0.0047757 STR Foxp1 Mt-rnr2 - Gm50306 0.8357518 0.0417876 0
Cox6b1 0.1212121 0.5244994 2.0418460 0.0045029 STR Foxp1 Mt-rnr2 - Gm50306 0.7880113 0.0417876 0
Rad21 0.1515152 0.5190905 1.8409366 0.0035447 STR Foxp1 Mt-rnr2 - Gm50306 0.6203279 0.0413552 0
Tcerg1 0.1212121 0.5157937 1.9724076 0.0067025 STR Foxp1 Mt-rnr2 - Gm50306 1.0000000 0.0509970 0
Oga 0.1212121 0.5113516 2.0114217 0.0047757 STR Foxp1 Mt-rnr2 - Gm50306 0.8357518 0.0417876 0
Fabp7 0.3333333 0.5094682 1.1605635 0.0044885 STR Foxp1 Mt-rnr2 - Gm50306 0.7854874 0.0417876 0
Phf21a 0.1212121 0.5037735 1.9698818 0.0064738 STR Foxp1 Mt-rnr2 - Gm50306 1.0000000 0.0509970 0
Cenpe 0.1212121 0.4704434 1.9121389 0.0057332 STR Foxp1 Mt-rnr2 - Gm50306 1.0000000 0.0477768 0
Psma6 0.1818182 0.4685808 1.5228138 0.0089278 STR Foxp1 Mt-rnr2 - Gm50306 1.0000000 0.0647317 0
Dach1 0.1212121 0.4587954 1.7765433 0.0160011 STR Foxp1 Mt-rnr2 - Gm50306 1.0000000 0.0903288 0
Hnrnpa2b1 1.0000000 1.6970012 1.7666607 0.0000000 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.0000000 0.0000000 0
H2az2 0.2040816 0.6967393 2.1159062 0.0000048 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.0009049 0.0004524 0
Stmn1 0.4285714 0.5334345 1.0390539 0.0002363 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.0441929 0.0147310 0
Mapk1 0.1224490 0.5127478 2.0862865 0.0005040 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.0942555 0.0235639 0
Dynll2 0.2040816 0.4895811 1.4924642 0.0011953 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.2235213 0.0372536 0
N4bp2l2 0.1020408 0.4699092 2.1199961 0.0010931 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.2044186 0.0372536 0
Atad2b 0.1224490 0.4413201 1.7822778 0.0030488 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.5701294 0.0771711 0
Cfl1 0.2040816 0.4317446 1.3323465 0.0033014 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.6173691 0.0771711 0
Eprs 0.1020408 0.4149398 1.8446392 0.0052516 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 0.9820458 0.1091162 0
Baz1b 0.1428571 0.3952027 1.4550803 0.0082830 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1434670 0
Tra2b 0.1428571 0.3891621 1.4532732 0.0084392 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1434670 0
Enox1 0.1224490 0.3772594 1.5365445 0.0099632 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1542522 0
Macroh2a2 0.1224490 0.3752653 1.5134262 0.0115483 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1542522 0
Cntnap5b 0.1020408 0.3750266 1.6355271 0.0145905 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1692859 0
Dapk1 0.1020408 0.3661214 1.6097389 0.0158762 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1692859 0
Mrps28 0.1020408 0.3649359 1.6474982 0.0111259 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1542522 0
Rb1cc1 0.1020408 0.3624240 1.5996783 0.0162949 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1692859 0
Eid1 0.2244898 0.3535953 1.0094829 0.0156199 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1692859 0
Vdac1 0.1224490 0.3482442 1.3945481 0.0211261 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1795721 0
Rpl7a 0.2040816 0.3434223 1.0449223 0.0194441 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1787996 0
Eny2 0.1020408 0.3411766 1.4973276 0.0238437 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1802594 0
Srsf6 0.1224490 0.3368682 1.3743145 0.0200791 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1787996 0
Zbtb18 0.1020408 0.3365347 1.4831459 0.0240989 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1802594 0
Zc3h13 0.1020408 0.3356338 1.4812397 0.0255446 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1803132 0
Asxl3 0.1020408 0.3353679 1.4630044 0.0303042 STR Foxp1 Mt-rnr2 - Hnrnpa2b1 1.0000000 0.1954100 0
Trim30a 1.0000000 1.6545908 1.7503085 0.0000000 STR Foxp1 Mt-rnr2 - Trim30a 0.0000000 0.0000000 0
Rnpc3 0.1481481 1.3763896 4.5248648 0.0000000 STR Foxp1 Mt-rnr2 - Trim30a 0.0000000 0.0000000 0
Trio 0.1851852 0.9274277 2.7723628 0.0000097 STR Foxp1 Mt-rnr2 - Trim30a 0.0023144 0.0003739 0
Trit1 0.1111111 0.8949886 3.4401875 0.0000091 STR Foxp1 Mt-rnr2 - Trim30a 0.0021805 0.0003739 0
Zcchc9 0.1111111 0.8891260 3.4310083 0.0000097 STR Foxp1 Mt-rnr2 - Trim30a 0.0023256 0.0003739 0
Trp53bp1 0.1111111 0.8760234 3.4054690 0.0000097 STR Foxp1 Mt-rnr2 - Trim30a 0.0023256 0.0003739 0
Stx8 0.1851852 0.8758163 2.6876810 0.0000110 STR Foxp1 Mt-rnr2 - Trim30a 0.0026172 0.0003739 0
Specc1 0.1111111 0.8717225 3.3165403 0.0000285 STR Foxp1 Mt-rnr2 - Trim30a 0.0068208 0.0008526 0
Gm10689 0.1111111 0.8100291 3.1919631 0.0000327 STR Foxp1 Mt-rnr2 - Trim30a 0.0078117 0.0008680 0
Bcl7a 0.1481481 0.8091582 2.7363033 0.0000749 STR Foxp1 Mt-rnr2 - Trim30a 0.0179027 0.0017577 0
Pip5k1a 0.1111111 0.8019629 3.1118236 0.0000809 STR Foxp1 Mt-rnr2 - Trim30a 0.0193343 0.0017577 0
Myef2 0.2222222 0.7709186 2.1713332 0.0001054 STR Foxp1 Mt-rnr2 - Trim30a 0.0251988 0.0020999 0
Celf5 0.1111111 0.7438859 2.9342131 0.0001894 STR Foxp1 Mt-rnr2 - Trim30a 0.0452662 0.0034820 0
Jund 0.1111111 0.7052833 2.8479960 0.0002154 STR Foxp1 Mt-rnr2 - Trim30a 0.0514865 0.0036776 0
Rnf216 0.1111111 0.6903015 2.7682852 0.0004143 STR Foxp1 Mt-rnr2 - Trim30a 0.0990163 0.0066011 0
Zyg11b 0.1481481 0.6780412 2.3662117 0.0005858 STR Foxp1 Mt-rnr2 - Trim30a 0.1400148 0.0087509 0
Gapdh 0.2222222 0.6592094 1.8476323 0.0009892 STR Foxp1 Mt-rnr2 - Trim30a 0.2364180 0.0119259 0
Bax 0.1111111 0.6514774 2.5854442 0.0011980 STR Foxp1 Mt-rnr2 - Trim30a 0.2863178 0.0136342 0
9330159F19Rik 0.1481481 0.6514020 2.2845064 0.0009927 STR Foxp1 Mt-rnr2 - Trim30a 0.2372668 0.0119259 0
Prkar1a 0.1481481 0.6512844 2.2599045 0.0012917 STR Foxp1 Mt-rnr2 - Trim30a 0.3087147 0.0140325 0
Eif4h 0.1111111 0.6499547 2.5406620 0.0017877 STR Foxp1 Mt-rnr2 - Trim30a 0.4272511 0.0185761 0
Ddb1 0.1111111 0.6382122 2.4775547 0.0027365 STR Foxp1 Mt-rnr2 - Trim30a 0.6540243 0.0251548 0
Trpm7 0.1111111 0.6306802 2.5853625 0.0008393 STR Foxp1 Mt-rnr2 - Trim30a 0.2006002 0.0118000 0
Mir100hg 0.1481481 0.6218751 2.2258089 0.0009980 STR Foxp1 Mt-rnr2 - Trim30a 0.2385175 0.0119259 0
Ppp4r3a 0.1481481 0.6190744 2.1488750 0.0022217 STR Foxp1 Mt-rnr2 - Trim30a 0.5309954 0.0212398 0
Ywhae 1.0000000 1.9172807 2.0312930 0.0000000 STR Foxp1 Mt-rnr2 - Ywhae 0.0000000 0.0000000 0
Mrps25 0.1052632 0.7415165 3.1203925 0.0000107 STR Foxp1 Mt-rnr2 - Ywhae 0.0024193 0.0012096 0
Sptssa 0.1052632 0.7106345 2.9780902 0.0000286 STR Foxp1 Mt-rnr2 - Ywhae 0.0064661 0.0017960 0
Rims1.var1 0.1315789 0.6803586 2.6141790 0.0000318 STR Foxp1 Mt-rnr2 - Ywhae 0.0071840 0.0017960 0
Polr2e 0.1052632 0.6588866 2.7430533 0.0001480 STR Foxp1 Mt-rnr2 - Ywhae 0.0334509 0.0055751 0
Pantr1 0.2105263 0.6457604 1.9281048 0.0001441 STR Foxp1 Mt-rnr2 - Ywhae 0.0325566 0.0055751 0
D030068K23Rik 0.1315789 0.6104562 2.2929685 0.0004342 STR Foxp1 Mt-rnr2 - Ywhae 0.0981216 0.0140174 0
Nedd8 0.1578947 0.5845153 2.0192390 0.0006370 STR Foxp1 Mt-rnr2 - Ywhae 0.1439597 0.0169586 0
Wbp4 0.1052632 0.5606259 2.4123806 0.0006753 STR Foxp1 Mt-rnr2 - Ywhae 0.1526270 0.0169586 0
Ddb1 0.1052632 0.5596282 2.3697402 0.0010295 STR Foxp1 Mt-rnr2 - Ywhae 0.2326729 0.0232673 0
Rps12-ps9 0.1052632 0.5447405 2.2935867 0.0015034 STR Foxp1 Mt-rnr2 - Ywhae 0.3397590 0.0308872 0
Myo1b 0.1315789 0.5360916 2.0196115 0.0019205 STR Foxp1 Mt-rnr2 - Ywhae 0.4340245 0.0361687 0
Psip1 0.2631579 0.5101803 1.3412389 0.0023915 STR Foxp1 Mt-rnr2 - Ywhae 0.5404831 0.0415756 0
Pdss2 0.1052632 0.5049930 2.1270917 0.0034462 STR Foxp1 Mt-rnr2 - Ywhae 0.7788456 0.0497597 0
Dhx15 0.1315789 0.4966999 1.9045227 0.0031319 STR Foxp1 Mt-rnr2 - Ywhae 0.7078116 0.0497597 0
Hmgb3 0.2368421 0.4878562 1.3607078 0.0035228 STR Foxp1 Mt-rnr2 - Ywhae 0.7961558 0.0497597 0
Pdcd5 0.1315789 0.4800217 1.8416762 0.0045429 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0603935 0
Sec61a1 0.1578947 0.4613452 1.6160237 0.0058908 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0700695 0
Clta 0.1842105 0.4562586 1.4649626 0.0069058 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0780352 0
Ddx5 0.3684211 0.4546741 0.9587446 0.0057087 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0700695 0
N4bp2 0.1052632 0.4475398 1.8959500 0.0093741 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0882728 0
Bag1 0.1315789 0.4467095 1.7047607 0.0083473 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0882728 0
Raly 0.1052632 0.4456435 1.8883367 0.0093741 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0882728 0
Zfp148 0.1578947 0.4420732 1.5468550 0.0089445 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.0882728 0
Nes 0.1315789 0.4316503 1.6352583 0.0123228 STR Foxp1 Mt-rnr2 - Ywhae 1.0000000 0.1043999 0


8.4 Heatmap of cell subtypes - log(CPM + 1)

8.5 Heatmap of cell subtypes - scale(log(CPM + 1))




9 Disclaimer

The analysis was performed through the non-profit and open-source pipeline JSEQ_scRNAseq. Remember, in silico analysis must be validated in vitro or in vivo. For more information, visit GitHub or contact us. JSEQ_scRNAseq was created at the Institute of Bioorganic Chemistry, Polish Academy of Sciences.